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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN41178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36796.9 Da PI: 5.075 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl KHN41178.1 14 KGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.5e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+e +++ +k+lG++ W++Ia +++ gRt++++k++w++ KHN41178.1 67 RGNFTQQEEECIIRMHKKLGNR-WSAIAVELP-GRTDNEIKNHWHT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.712 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.21 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-11 | 69 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MVRTPSCDKS GMRKGTWTPE EDMKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNIKRGNF TQQEEECIIR MHKKLGNRWS AIAVELPGRT DNEIKNHWHT ALKKRSQQNT 120 LINEETKAIK SKNKESVHNN GVFVTLPATS QISDNSSLSP VSSTCSEFSS ITSDLSTAAS 180 CMENLVFEDD DLGFLDLYNI DPMNGNLWTE LNLDGISFNT PCEIVSGDTN STFQSSSSSN 240 SNTLDSPHQS TSESIVVNND FGRFLDSYEE ATVDNFWTQS YVADMSHVPS ELFVPSVAES 300 EYFTPLYDDL WGQTHLYHEN HCLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-28 | 14 | 115 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-28 | 14 | 115 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235897 | 1e-60 | AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526304.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A0B2S8W8 | 0.0 | A0A0B2S8W8_GLYSO; Myb-related protein Myb4 | ||||
TrEMBL | K7KY78 | 0.0 | K7KY78_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G45547.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 6e-60 | myb domain protein 14 |
Publications ? help Back to Top | |||
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